ESHEL BEN-JACOB School of Physics and Astronomy, Tel Aviv University

In Press Engineered neuronal circuits: A new platform for studying the role of modular topology. Shein-Idelson, M., Ben-Jacob, E., Hanein, Y., Frontiers in Neuroengineering Vol. 4(10) Doi:10.3389/fneng.2011.00010 (in press) The natural autoantibody repertoire in newborns and adults: a current overview. Madi, A., Bransburg-Zabary, S., Kenett, D. Y., Ben-Jacob, E., Cohen I. R., Landes Bioscience (in press). Smart Swarms of Bacteria-Inspired Agents with Performance Adaptable Interactions. Shklarsh, A. Ariel, G., Schneidman, E. & Ben-Jacob, E., PLoS Computational Biology (in press). 2011 Computing with bacterial constituents, cells and populations: from bioputing to bactoputing Vic Norris, Abdallah Zemirline, Patrick Amar, Jean Nicolas Audinot Pascal Ballet, Eshel Ben-Jacob,Gilles Bernot, Guillaume Beslon, Armelle Cabin, Eric Fanchon, Jean-Louis Giavitto, Nicolas Glade Patrick Greussay, Yohann Grondin, James A. Foster, Guillaume Hutzler, Ju ¨rgen Jost, Francois Kepes, Olivier Michel, Franck Molina, Jacqueline Signorini, Pasquale Stano, Alain R. Thierry. Theory Biosci. (2011) 130:211–228. DOI 10.1007/s12064-010-0118-4 Mutually facilitated dispersal between the nonmotile fungus Aspergillus fumigatus and the swarming bacterium Paenibacillus vortex Colin J. Ingham, Oren Kalisman, Alin Finkelshtein,and Eshel Ben-Jacob. PNAS Early Edition. www.pnas.org/cgi/doi/10.1073/pnas.1102097108 Global and Local Features of Semantic Networks: Evidence from the Hebrew Mental Lexicon. Kenett, Y. N., Kenett, D. Y., Ben-Jacob, E., Faust, M. PLos ONE Vol. 6(8): e23912,12 pages (2011) `Self-Assisted’ Amoeboid Navigation in Complex Enviroments. Hecht, I., Levine, H., Rappel, W. J., Ben-Jacob, E., PLoS ONE Vol. 6(8): e21955, 12 pages (2011). Activated Membrane Patches Guide Chemotactic Cell Motility. Hecht, I., Skoge, M. L., Charest, P. G., Ben-Jacob, E., Firtel, R. A., Loomis W. f., Levine, H., Rappel, W. J., PLoS Comput Biol Vol. 7(6): e1002044, 8 pages (2011). The Effect of Nondialyzable Material (NDM) Cranberry Extract on Formation of Contact Lens Biofilm by Staphylococcus epidermidis. Leshem, R., Maharshak, I., Ben-Jacob, E., Ofek, I., Kremer, I., Invest. Ophthalmol. Vis. Sci. Vol. 52(7), 4929-4934 (2011). Hidden temporal order unveiled in stock market volatility variance Shapira, Y., Kenett, D. Y.& Ben-Jacob, E. AIP Advance Vol 1, 022127 (2011); doi:10.1063/1.3598412 Reduced synchronization persistence in neural networks derived from Atm-deficient mice. Levine-Small, N., Yekutieli, Z., Aljadeff, J., Boccaletti, S., Ben-Jacob, E., Frontiers in Neuroscience Vol. 5 article 46 pp 1-16 (2011) Smart bacteria Ben-Jacob, E., Shapira, Y., Tauber, A. I. In “Chimera and Consciousness. Evolution of the Sensory Self.edited by Margulis, L., Asikainen, C.A. and Krumbein, W.E., The MIT Press, Cambridge Boston (2011). Network Theory Analysis of Antibody-Antigen Reactivity Data: The Immune Trees at Birth and Adulthood. Madi, A., Kenett, D.Y., Bransburg-Zabary, S., Merbl, Y., Quintana, F.J., Tauber, A. I., Cohen, I.R., Ben-Jacob, E., PLoS ONE Vol 6(3) e17445 Analyses of antigen dependency networks unveil immune system reorganization between birth and adulthood Madi, A., Kenett, D.Y., Bransburg-Zabary, S., Merbl, Y., Quintana, F.J., Boccaletti, S. Tauber, A. I., Cohen, I.R., Ben-Jacob, E., Chaos Vol. 21 016109 (2011) Index Cohesive Force Analysis Reveals That the US Market Became Prone to Systemic Collapses Since 2002 Kenett.D, Shapira.Y, Madi.A, Bransburg-Zabary. S, Gur-Gershgoren.G & Ben-Jacob.E. PLoS ONE Vol. 6(4): e19378 (2011) Time-frequency characterization of electrocorticographic recordings of epileptic patients using frequency-entropy similarity: A comparison to other bi T. Gazit, I. Doron, O. Sagher, M.H. Kohrman, V.L. Towle, M. Teicher, E. Ben-Jacob. J. Neuroscience Methods Vol. 194, pp 358-373 (2011). 2010 Gene Network Holography on the Soil Bacterium Bacillus subtilis. Dalit Roth, Asaf Madi, Dror Y. Kenett, and Eshel Ben-Jacob. In Biocommunication in Soil Microorganisms. Edited by Guenther Witzany, SpringerVol. 23, pp. 255-281(2010) Dynamics of Stock Market Correlations Kenett. D, Shapira. Y, Madi. A, Bransburg-Zabary. S, Gur-Gershgoren.G & Ben-Jacob, E.AUCO Czech Economic Review 4(2010) 330–340 Dominating Clasp of the Financial Sector Revealed by Partial Correlation Analysis of the Stock Market Kenett. D, Tumminello. M, Madi. A, Mantegna. R.N, Gur-Gershgoren.G & Ben-Jacob, E PLoS ONE 5(12) (on line)e15032 Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments. Sirota-Madi et al. BMC Genomics 2010, 11:710; http://www.biomedcentral.com/1471-2164/11/71 Innate Synchronous Oscillations in Freely-Organized Small Neuronal Circuits. Shein Idelson M, Ben-Jacob E, Hanein Y. PLoS ONE 5(12) (on line) doi:10.1371/journal.pone.0014443 From network structure to network reorganization: implications for adult neurogenesis Casey M. Schneider-Mizell, Jack M. Parent, Eshel Ben-Jacob, Michal R. Zochowski, Leonard M. Sander. Phys. Biol. Vol 7(4) 046008 (on line) (2010) Revealing voxel correlation cliques by functional holography analysis of fMRI Jacoba, Y., Rapson, A., Kafri, M., Baruchi, I., Hendler T & Ben Jacob, E. Journal of Neuroscience Methods 191 126–137 (2010) Entropic Effects and Slow Kinetics Revealed in Titrations of D2O H2O Solutions with Different D/H Ratios Katsir, Y., Shapira. Y., Mastai, Y., Dimova, R., and Ben- Jacob, E. J.Phys. Chem. B 2010, 114, 5755–5763 (2010). Lethal protein produced in response to competition between sibling bacterial colonies Be'er, A., Ariel, G., Kalishman, O., Helman, Y., Sirota-Madi, A., Zhang, H.P., Florin, E.L., Payne, S.M., Ben-Jacob, E., Swinney, H.L., PNAS, Vol. 107(14) pp 6258-6263 (2010) Bacteria determine fate by playing dice with controlled odds. Ben-Jacob, E., Schultz, D., PNAS, Vol. 107(30) pp 13197-8 (2010) Nonlinear Gap Junctions Enable Long-Distance Propagation of Pulsating Calcium Waves in Astrocyte Networks. Goldberg, M., De Pittà, M., Volman, V., Berry, H., Ben-Jacob, E., PLoS Comp. Biol. Vol. 6(8): e1000909 (2010). Wrestling model of the repertoire of activity propagation modes in quadruple neural networks Shteingart, H., Raichman, N., Baruchi I.,Ben-Jacob, E., Frontiers in Computational Neuroscience Vol. 4(25)(2010). A binary search approach to whole-genome data analysis Brodsky, L., Kogana, S., Ben-Jacob, E., Nevoa, E., PNAS, Vol. 107(39) pp 16893-16898 (2010). Loss of Intrinsic Organization of Cerebellar Networks in Spinocerebellar Ataxia Type 1: Correlates with Disease Severity and Duration. A.Solodkin., E.Peri, E.Elinor Chen., Ben-Jacob., E., C. M. Gomez, Cerebellum Oct issue DOI 10.1007/s12311-010-0214-5, Springer (2010). Gene Network Holography of the Soil Bacterium Bacillus subtilis Roth, D., Madi, A., Kenett, D.Y., Ben-Jacob, E., Chapter 10, pp 255-280 in G.Witzany (ed.), Biocommunication in Soil Microorganisms, Soil Biology Series Vol. 23 Springer-Verlag Berlin Heidelberg (2010) 2009 RMT Assessments of the Market Laten Information Embedded in the Stocks’ R Normalized, and Partial Correlations Kenett. D, Shapira. Y, & Ben-Jacob, E. Hindawi Publishing Corporation Journal of Probability and Statistics. Article ID 249370. doi:10.1155/2009/249370 (2009) Deciding fate in adverse times: Sporulation and competence in Bacillus subtilis Schultza, D., Wolynesa, G. P., Ben-Jacob, E.and Onuchica, J. N. PNAS (106) 50. 21027-21034. (2009). Supplemental figures Locally Balanced Dendritic Integration by Short-term Synaptic Plasticity and Active Dendritic Conductances. Volman,V., Levine, H., Ben-Jacob, E. and Sejnowski, J. T. Articles. J Neurophysiol (102) 3234-3250. (2009). Supplemental figures: figure S1; Figure S2; Figure Legends. The Index Cohesive Effect on Stock Correlations. Shapira, Y., Kenett, D.Y., and Ben-Jacob, E. Eur. Phys. J. B 72, 657-669(2009). Formation of Synchronization Cliques During Development of Modular Neural Networks Fuchs, E., Ayali, A., Ben-Jacob, E., Boccaletti, S. Physical Biology, Manuscript # PB/312235/PAP/20526 (2009). Bacterial Complexity: More is Different on all Levels. Ben-Jacob, E. In “Systems Biology: the Challenge of Complexity”, Edited by Shigetada Nakanishi, Ryoichiro Kageyama and Dai Watanabe Springer Tokyo (2009) Learning from Bacteria about Natural Information Processing Ben-Jacob E. Natural Genetic Engineering and Natural Genome Editing. Edited by G. Witzany. Ann. N.Y. Acad. Sci. Vol. 1178 pp 78–90 (2009). Organization of the autoantibody repertoire in healthy newborns and adults revealed by system level informatics of antige microarray data. Madi, A., Hecht, I., Bransburg- Zabary, S., Merbl, Y., Pick, A., Zucker-Toledano, M., Francisco, J. Quintana, Tauber, A. I., Cohen, I. R. and Ben-Jacob, E. PNAS, Vol. 106(34) pp 14484-14489 (2009). Supporting information: (main table1 table2 table3) and movies (1 2 3 4 5 6) Glutamate regulation of calcium and IP3 oscillating and pulsating dynamics in astrocytes De Pittà, M., Goldberg M., Volman V., Berry H., Ben-Jacob E., Journal of Biological Physics, Manuscript # JOBP466 Deadly competition between sibling bacterial colonies Be’er, A., Zhang, H., Florin, E.L., Payne, S.M, Ben-Jacob, E. and Swinney, H. PNAS Vol. 106(20), pp. 428-433 (2009). Process entanglement as a neuronal anchorage mechanism to rough surfaces Sorkin, R., Greenbaum, A., David-Pur, M., Anava, S., Ayali, A., Ben-Jacob, E. and Hanein, Y. Nanotechnology 20 (2009) 015101 (8pp) Engineered neuronal circuits shaped and interfaced with carbon nanotube microelectrodes arrays. Shein, M., Greenbaum, A., Gabay, T., Sorkin, R., David-Pur, M. Ben-Jacob, E. and Hanein, Y. Biomed Microdevices Vol. 11(2), pp. 495-501(2009). Cultured Neuronal Networks Express Complex Patterns of Activity and Morphological Memory. Raichman, N., Rubinsky, L., Shein, M., Baruchi, I., Volman, V., and Ben-Jacob, E., pp 257-278 in World Scientific Lecture Notes in Complex System Vol. 10 : Handbook on Biological Networks, editors: Boccaletti, S., V. Latora, Y. Moreno. World Scientific, Singapore (2009). Reverse engineering of the spindle assembly checkpoint. Doncic, A., Ben-Jacob, E., Einav, S., Barkai, N., PLoS ONE Vol. 4(8): 6495 (2009). 2008 The regulative role of neurite mechanical tension in network development Anava, S., Greenbaum, A., Ben-Jacob, E., Hanein, Y. and Ayali, A., Biophysical Journal Vol. 96(4) pp. 1661-1670 (2008). Multimodal encoding in a simplified model of intracellular calcium signaling De Pittà, M., Volman, V., Levine, H. and Ben-Jacob, E. Cogn Process Publisged on line 22 November 2008 Multi-modal information encoding in a simplified model of calcium dynamics De Pitta, M., Volman, V., Levine, H. and Ben-Jacob, E. Cognitive Processes Online publication DOI 10.1007/s10339-008- 0242-y (2008). Carbon nanotube micro electrodes for neuronal interfocing. Ben-Jacob, E. and Hanein, Y. J. Mater. Chem., 2008, 18, 5181-5186 . Social behavior of bacteria: from physics to complex organization Ben-Jacob, E. Eur. Phys. J. B 65, 315-322 (2008) Management of synchronized network activity by highly active neurons Shein, M., Volman, V., Raichman, N., Hanein, Y. and Ben-Jacob, E. Phys. Biol. 5 (2008). Spatio-temporal motifs 'remembered' in neuronal networks following profound hypothermia Rubinsky, L., Raichman, N., Lavee, J., Frenk, H. and Ben-Jacob, E. Neural Networks (online publication 10.1016/j.neunet.2008.06.008) (2008). Genome Holography: Deciphering Function-Form Motifs from Gene Expression Data Madi, A., Friedman, Y., Roth, D., Regev, T., Bransburg-Zabary, S., Ben-Jacob, E. PLoS ONE, vol 3 Issue 7(2008). Coexistence of amplitude and frequency modulations in intracellular calcium dynamics De Pitta', M., Volman, V., Levine, H., Pioggia, G., De Rossi, D. and Ben-Jacob, E. Physical Review E 77, 030903(2008) The emergence and properties of mutual synchronization in in vitro coupled cortical networks. Baruchi, I., Volman, V., Raichman, N., Shein, M., Ben Jacob, E. European Journal of Neuroscience (EJN) Vol. 28, pp. 1825-1835, (2008). Pulsating-gliding transtion in the dynamics of levitating liquid nitrogen droplets. Snezhko, A., Ben-Jacob, E. and Aranson, I. New Journal of Physics 10 (2008) 043034 (12pp). Identifying repeating motifs in the activation of synchronized bursts in cultured neuronal networks. Raichman, N. and Ben-Jacob, E. Journal of Neuroscience Methods 170 (2008)96-110. Emergence of agent Swarm Migration and vortex formation through inelatic Collisions Grossman, D., Aranson, I. S. and Ben-Jacob, E. New Journal of Physics 10 (2008) Swarming and Complex pattern Formation Paenibacillus vortex studied by imaging and tracking celles Ben-Jacob, E., Ingham, J. C. BMC Microbiology 8:36 (2008) 2007 Detecting and localizing the foci in human epileptic seizures Ben-Jacob, E., Boccaletti, S., Pomyalov, S., Procaccia, I. and Towle, L. V. CHAOS 17, 043113 (2007). Study of hypothermia on cultured neuronal networks using multi-electrode arrays Rubinsky, L., Raichman, N., Baruchi, I., Shein, M., Lavee, J., Frenk, H., Ben-Jacob, E. Journal of Neuroscience Methods 160 (2007) 288-293 Electro-chemical and biological properties of carbon nanotube based multi-electrode arrays. Gabay, T., Ben-David, M., Kalifa, I., Sorkin, R., R. Abrams, Z., Ben-Jacob, E. And Hanein, Y. Nanotechnology, 18, 035201-035206 (2007). Mapping and assessment of epileptogenic foci using frequency-entropy templates Ben-Jacob, E., Doron, I., Gazit, T., Rephaeli, E., Sagher, O. and Towle, L. V. PHYSICAL REVIEW E 76, 051903 2007. Correlated phenotypic transitions to competence in bacterial colonies Hecht, I., Ben-Jacob, E. and Levine, H. Phys. Rev. E 76, 040901(R)(2007) The Astrocyte as aGatekeeper of Synaptic I-nformation Transfer Volman, V., Ben-Jacob, E. and Levine, H. Neural Computation 19, (2007) 303-326/ Calcium and Synaptic dynamics underlying rererberatory activity in Neuronal networks. Volman, V., Gerkin, C. R., Lau, R. M., Ben-Jacob, E. and Guo-Qiang. Bi.Phys. Biol. 4 (2007) 91-103 Towards Neuro-Memory-Chip: Imprinting multiple memories in cultured neural networks Baruchi, I. and Ben-Jacob, E. PHYSICAL REVIEW E 75, 050901.R (2007) Compact self-wiring in cultured neural networks Sorkin, R., Gabay, T., Blinder, P., Baranes, D., Ben-Jacob, E. and Hanein, Y. Journal of neural Engineering (2007) The Effect of rf-irradiation on electrochemical_deposition Ben-Jacob, E., Aharonov, V.L., Miller, L., Katsir, Y. Journal of The Electrochemical Society, 154 4 D249-D259 2007 2006 Adult, sex-specific behavior characterized by elevated neuronal functional complexity Fuchsa, E., Hulata, E., Ben-Jacob, E. and Ayali, A. Lippincott Williams and Wilkins Vol 17, no 11(2006) 1153-1158 The Astrocyteas Gatekeeper of Synaptic Information Transfer Volman, V., Ben-Jacob, E. and Levine, H. Neural Computation(2006) Noise resistance in the spindle assembly checkpoint Doncic, A., Ben-Jacob, E. and Barkai, N. Molecular Systems Biology (2006) Time-invariant person-specific frequency templates in human brain activity Doron, I., Hulata, E., Baruchi, I., Towle, V.L. and Ben-Jacob, E. Phys.Rev.Lett.PRL 96, 258101 (2006) Harnessing Bacterial Intelligence: A Prerequisite for Human Habitation of Space Ben-Jacob, E. Beyond Earth, Chapter 13 (2006) Functional Holography Analysis: Simplifying the complexity of dynamical networks Baruchi, I., grossman, D., Volman, V., Hunter, J., Towle, V. L., Ben-Jacob, E. In Chaos Focus Issue on Stability and Pattern Formation in Networks of Dynamical Systems edited by L. Pecora and S. Boccaletti Chaos 16, 015112 (2006) Collective plasticity and individual stability in cultured neural networks Raichman, N., Volman, V. and Ben-Jacob, E. Neurocomputing 69, 1150-1154(2006) Seeking the Foundations of Cognition in Bacteria: From Schrdinger's Negative Entropy to Latent Information Ben-Jacob, E., Shapira, Y. and Tauber, I. A. Physica A vol 359 ; 495-524, (2006) 2005 Self-Regulated complexity in neural networks Hulata, E., Volman, V., Ben-Jacob, E. J. Natural Computing v4. n4 363-386 (2005) Topological classification of biological computing networks Blinder, P., Baruchi, I., Volman, V., Baranes, D., Levine, H. and Ben-Jacob, E. Natural Computing, v 4 n 4 339-361 (2005) Controlling an oscillating Jackson-type network having state-dependent service rates Arazi, A., Ben-Jacob, E., Yechiali, U. Math. Meth. Oper. Res. DOI 10.1007/s00186-005-0041-5 (2005) Self-engineering capabilities of bacteria Ben-Jacob, E. and Levine, H. Interface. Published online. rsif (2005) Bacteria harnessing complexity Ben-Jacob, E., Aharonov, Y. and Shapira, Y. Biofilms (2005) 1, 239263 Manifestation of function-follow-form in cultured neuronal networks Volman, V., Baruchi, I. and Ben-Jacob, E. Physical Biology 2(2005) 98-110. A Two-phase growth strategy in cultured neuronal networks as reflected by the distribution of neurite branching angles Shefi, O., Golobovitz, S., Ben-Jacob, E. and Ayali, A. J. Neurobiol. 62(3): 361-368. (2005) 98-110. Meaning-Based Natural Intelligence Vs. Information-Based Artificial Intelligence Ben-Jacob, E. and Shapira, Y. Cradle of Creativity (2005). Carbon Nanotube Sites for Neural- Network Patterning and Recording Gabay, T., Kalifa, I., Ezra, L., Ben-Jacob, E. and Hanein, Y. Tel Aviv Nano Technology Workshop Maagan April 2005. Evaluating putative mechanisms of the mitotic spindle checkpoint Doncic, A., Ben-Jacob, E., and Barkai, N. 6332-6337 PNAS vol. 102 no. 18 May 3, 2005 Functional Holography of Complex Networks Activity From Cultures to the Human Brain Baruchi, I., Towle, V.L. and Ben-Jacob, E. Complexity, Volume 10, No 3, p. 38-51,(2005). Engineered self-organization of neural networks using carbon nanotube clusters Gabay, T., Jakobs,E., Ben-Jacob, E., Hanein, Y. Physica A 350 611-621 (2005). 2004 Functional Holography of Recorded Neuronal Networks Activity Baruchi, I. and Ben-Jacob, E. Neuroinformatics , Volume 2, Issue 3, p. 333-352,(Fall 2004). Self-regulated homoclinic chaos in neural networks activity Volman, V., Baruchi, I. and Ben-Jacob, E. Experimental Chaos: 8th Experimental Chaos Conference, Eited by Boccaletti S. et al., American Institute of Physics, Melville NY,p.197-209, (2004) Modeling of Synchronized Bursting Events-The Importance of Inhomogeneity. Persi, E., Horn, D., Volman, V., Segev, R., Ben-Jacob, E. Neural Computation vol 16(12) (December 2004) Contextual Regularity and Complexity of Neuronal Activity: from Stand-Alone Cultures to Task-Performing Animals. Ayali, A., Fuchs, E., Zilberstein, Y., Shefi, O., Hulata, E., Baruchi, I., Ben-Jacob, E. Complexity, Vol 9, Issue 6, 25-32, (July/August 2004) . Engineered Self Organization in natural and man-made Systems. Raichman, N., Gabay, T., Katsir, Y., Shapira, Y., and Ben-Jacob, E. Continuum Models and Discrete Systems, Edited by Bergman D. et al Kluwer Academic Publishers, Netherlands,p.187-205 (2004) Des fleurs de Bacteries Ben-Jacob, E., Levine, H. Les formes de la vie, Pour La Science, p.78-83 (2004) Bacterial Linguistic Communication and Social Intelligence. Ben-Jacob, E., Becker, I., Shapira, Y. Trends in Microbiology, Vol 12/8 pp 366-372 (2004). Physical schemata underlying biological pattern formation-examples,issues and strategies. Levine, H. and Ben-Jacob, E. J. Physical Biology 1, pp 14-22 (June 2004). Biophysical constraints on neuronal branching. Shefi, O., Harel, A., Chklovskii, D.B., Ben-Jacob, E. and Ayali, A. Neurocomputing Vol 58-60C, pp 487-495 (2004). Self-Regulated Complexity in Cultured Neuronal Networks. Hulata, E., Baruchi, I., Segev, R., Shapira, Y., and Ben-Jacob, E. Phys. Rev. Lett. 92(19):198105(1)-198105(4) (2004). Neural modeling of synchronized bursting events. Persi, E., Horn, D., Segev, R., Ben-Jacob, E., Volman, V. Neurocomputing Vol 58 60C, pp 179-184 (2004). Hidden Neuronal Correlations in Cultured Networks. Segev, R., Baruchi, I., Hulata, E., Ben-Jacob, E. Phys. Rev. Lett. 92(11): 118102(1)-118102(4) (2004). Generative Modeling of Regulated Activity in Cultured Neuronal Networks. Volman, V., Baruchi, I., Persi, E., Ben-Jacob, E. Physica A 335: 249-278 (2004). Bridging Genetic Netowrks and Queing Theory. Arazi, A., Ben-Jacob, E., Yechiali, U. Physics A 332 :585-616 (2004). 2003 Communication- Basd Regulated Freedom of Response in Bacterial Colonies. Ben-Jacob, E., Shapira, Y., Becker, I. Physica A Vol 330/1-2 pp 218-231 (2003). Formation of Electrically Active Clusterized Neural Networks. Segev, R., Benveniste, M., Shapira, Y., Ben-Jacob, E. Phys. Rev. Lett. 90: 168101/1-4 (2003). Bursts of sectors in expanding bacterial colonies as a possible model for tumor growth and metastases. Ron, I. G., Golding, I., Lifsitz-Mercer, B., Ben-Jacob, E. Physica A, 320, 485-96 (2003). Bacterial Self-Organization: Co-Enhancement of Complexification and Adaptability in a Dynamic Environment. Ben-Jacob, E. Phil. Trans. R. Soc. Lond. A, 361:1283-1312, (2003). Evolvable Hardware: Genetic Search in a Physical Realm. Raichman, N., Segev, R., Ben-Jacob, E., Physica A 326: (1-2)265-285 (2003). 2002 A Method for Spike Sorting and Detection Based on Wavelet Packets and Shannon's Mutual Information. Hulata, E., Segev, R., Ben-Jacob, E., J.Neuroscience Methods 117 1-12 (2002). Sub-micromorphology of the epicuticle of hornets: AFM studies Ishay, S. J., Litinetsky, L., Pertsis, V., Barkay, Z. and Ben-Jacob, E. J. Electron Micr. 51(1): 79-86(2002). Long Term Behavior of Lithographically Prepared in vitro Neuronal Networks. Segev, R., Benveniste, M., Hulata, E., Cohen, N., Palevski, A., Kapon, E., Shapira, Y., Ben-Jacob, E. Phys. Rev. Lett. 88, 118102 (2002). When Order Comes Naturally. Ben-Jacob, E. Nature 415, 370 (2002). Morphological characterization of in vitro neuronal networks. Shefi, O., Golding, I., Segev, R., Ben-Jacob, E. and Ayali, A. Physical Review E 66: 021905 (2002) Growth morpology of two-dimensional insect neural networks. Ayali, A., Shefi, O. and Ben-Jacob, E. Neurocomputing 44-46 Pp 635-643 (2002). Self-organization of two-dimensional insect neural networks. Ayali, A., Shefi, O. and Ben-Jacob, E. In: Experimental Chaos 2001. (Eds. Boccaletti, S. Gluckmam, B. J. Kurths, J. Pecora, L. M. and Spano, M. L.). pp 465-475. American Institute of Physics, Melville, New York.(2002) 2001 A Quantitative Study of the Dynamics of Adaptive Mutations Appearance. Golding, I., Drossel, B., Shapira, Y., Ben-Jacob, E. PhysicaA 294, 195-212 (2001). The Artistry of Nature. Ben-Jacob, E., Levine, H. Nature 409, 985-986 (2001). Observations and Modeling of Synchronized Bursting in 2D Neural Networks. Segev, R., Shapira, Y., Benveniste, M., Ben-Jacob, E., Phys. Rev. E 64, 011920 (2001). Spontaneous synchronized bursting in 2D neural networks. Segev, R., Ben-Jacob, E. Physica A, 302, no.1-4, pp.64-69 (2001). Atomic force pulling: probing the local elasticity of the cell membrane. Scheffer, L., Bitler, A., Ben-Jacob, E., Korenstein, R. European Biophysics Journal, vol.30, no.2, pp.83-90 (2001). Biofluiddynamics of lubricating bacteria. Cohen, I., Golding, I., Ron, I. G., Ben-Jacob, E. Mathematical Methods in the Applied Sciences 24, no.17-18, pp.1429-68 (2001). Chemical waves and internal energy during cooperative self-wiring of neural nets. Segev, R., Ben Jacob, E. Neurocomputing 38-40 pp. 875-879 (2001) 2000 Bacterial Cooperative Organization Under Antibiotic Stress. Ben-Jacob, E., Cohen, I., Golding, I., Gutnick, D., Tcherpakov, M., Helbing, D., Ron, I. PhysicaA 282 247-282 (2000). Detection and Sorting of Neural Spikes Using Wavelet Packets. Hulata, E., Segev, R., Shapira, Y., Benveniste, M., Ben-Jacob, E. Phys. Rev. Lett. 85, 4637-4640 (2000). The Cooperative Self-Organization of Microorganisms. Ben-Jacob, E., Cohen, I., Levine, H. Adv. Phys. 49, 395-554 (2000). Modeling Branching and Chiral Colonial Patterning of Lubricating Bacteria. Ben-Jacob, E., Cohen, I., Golding, I., Kozlovsky, Y. Mathematical Models for Biological Pattern Formation, IMA volumes, IMA Vol. Math. Appl., 121, P. K Maini and H. G. Othmer, eds. Springer-Verlag, New-York, pp. 211-254. (2001). From branching to nebula patterning during colonial development of the Paenibacillus alvei bacteria. Cohen, I., Ron, I. G., Ben-Jacob. E. Physica A, vol.286, pp.321-36 (2000). Conformation changes and folding of proteins mediated by Davydov's soliton. Caspi, S., Ben-Jacob, E. Physics Letters A, vol.272, no.1-2, pp.124-9 (2000) Generic modeling of chemotactic based self-wiring of neural networks. Segev,R., Ben-Jacob, E. Neural Networks, vol.13, no.2, pp.185-99 (2000).

Permission Required for download

Top of Page

Previous Page

Home Page