Under Review
- Revealing Hidden Hemispheric Correlations by Functional Holography
Analysis of fMRI Recordings.
Jacob, Y., Rapson, A., Kafri, M., Baruchi,
I., Hendler, T., Ben-Jacob, E., Neuroimage, Manuscript # NIMG-09-
293
- RMT Assessments of the Market Latent Information Embeded in the Stocks’ Raw, Normalized, and Partial Correlations.
Kenett, D.Y., Shapira, Y. and Ben-Jacob, E. Journal of Probability and Statistics.
2009
- Deciding fate in adverse times: Sporulation and competence in Bacillus subtilis
Schultza, D., Wolynesa, G. P., Ben-Jacob, E.and Onuchica, J. N. PNAS (106) 50. 21027-21034. (2009).
Supplemental figures
- Locally Balanced Dendritic Integration by Short-term Synaptic Plasticity and
Active Dendritic Conductances.
Volman,V., Levine, H., Ben-Jacob, E. and Sejnowski, J. T. Articles. J Neurophysiol (102) 3234-3250. (2009).
Supplemental figures: figure S1; Figure S2; Figure Legends.
- The Index Cohesive Effect on Stock Correlations.
Shapira, Y., Kenett, D.Y., and Ben-Jacob, E. Eur. Phys. J. B 72, 657-669(2009).
- Formation of Synchronization Cliques During Development of Modular
Neural Networks
Fuchs, E., Ayali, A., Ben-Jacob, E., Boccaletti, S.
Physical Biology, Manuscript # PB/312235/PAP/20526 (2009).
- Bacterial Complexity: More is Different on all Levels.
Ben-Jacob, E.
In “Systems Biology: the Challenge of Complexity”, Edited by
Shigetada Nakanishi, Ryoichiro Kageyama and Dai Watanabe Springer Tokyo (2009)
- Learning from Bacteria about Natural Information Processing
Ben-Jacob E. Natural Genetic Engineering and Natural Genome Editing. Edited by G. Witzany. Ann. N.Y. Acad. Sci. Vol. 1178 pp 78–90 (2009).
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Organization of the autoantibody repertoire in healthy newborns and adults revealed by system level informatics of antige microarray data.
Madi, A., Hecht, I., Bransburg- Zabary, S., Merbl, Y., Pick, A., Zucker-Toledano, M., Francisco, J. Quintana, Tauber, A. I., Cohen, I. R. and Ben-Jacob, E. PNAS, Vol. 106(34) pp 14484-14489 (2009). Supporting information: (main table1 table2 table3) and movies (1 2 3 4 5 6)
- Glutamate regulation of calcium and IP3 oscillating and pulsating
dynamics in astrocytes
De Pittà, M., Goldberg M., Volman V., Berry
H., Ben-Jacob E., Journal of Biological Physics, Manuscript #
JOBP466
- Deadly competition between sibling bacterial colonies
Be’er, A.,
Zhang, H., Florin, E.L., Payne, S.M, Ben-Jacob, E. and Swinney, H.
PNAS Vol. 106(20), pp. 428-433 (2009).
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Process entanglement as a neuronal anchorage mechanism to rough surfaces
Sorkin, R., Greenbaum, A., David-Pur, M., Anava, S., Ayali, A., Ben-Jacob, E. and Hanein, Y. Nanotechnology 20 (2009) 015101 (8pp)
- Engineered neuronal circuits shaped and interfaced with carbon
nanotube microelectrodes arrays.
Shein, M., Greenbaum, A., Gabay,
T., Sorkin, R., David-Pur, M. Ben-Jacob, E. and Hanein, Y. Biomed
Microdevices Vol. 11(2), pp. 495-501(2009).
2008
- The regulative role of neurite mechanical tension in network development
Anava, S., Greenbaum, A., Ben-Jacob, E., Hanein, Y. and Ayali, A., Biophysical Journal Vol. 96(4) pp. 1661-1670 (2008).
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Multimodal encoding in a simplified model of intracellular calcium signaling
De Pittà, M., Volman, V., Levine, H. and Ben-Jacob, E. Cogn Process Publisged on line 22 November 2008
- Multi-modal information encoding in a simplified model of calcium dynamics
De Pitta, M., Volman, V., Levine, H. and Ben-Jacob, E. Cognitive Processes Online publication DOI 10.1007/s10339-008-
0242-y (2008).
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Carbon nanotube micro electrodes for neuronal interfocing.
Ben-Jacob, E. and Hanein, Y. J. Mater. Chem., 2008, 18, 5181-5186
.
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Social behavior of bacteria: from physics to complex organization
Ben-Jacob, E. Eur. Phys. J. B 65, 315-322 (2008)
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Management of synchronized network activity by highly active neurons
Shein, M., Volman, V., Raichman, N., Hanein, Y. and Ben-Jacob, E. Phys. Biol. 5 (2008).
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Spatio-temporal motifs 'remembered' in neuronal networks following profound hypothermia
Rubinsky, L., Raichman, N., Lavee, J., Frenk, H. and Ben-Jacob, E. Neural Networks (online publication 10.1016/j.neunet.2008.06.008) (2008).
- Genome Holography: Deciphering Function-Form Motifs from Gene Expression Data
Madi, A., Friedman, Y., Roth, D., Regev, T., Bransburg-Zabary, S., Ben-Jacob, E. PLoS ONE, vol 3 Issue 7(2008).
- Coexistence of amplitude and frequency modulations in intracellular calcium dynamics
De Pitta', M., Volman, V., Levine, H., Pioggia, G., De Rossi, D. and Ben-Jacob, E. Physical Review E 77, 030903(2008)
- The emergence and properties of mutual synchronization in in vitro coupled cortical networks.
Baruchi, I., Volman, V., Raichman, N.,
Shein, M., Ben Jacob, E. European Journal of Neuroscience (EJN)
Vol. 28, pp. 1825-1835, (2008).
- Pulsating-gliding transtion in the dynamics of
levitating liquid nitrogen droplets.
Snezhko, A., Ben-Jacob, E. and Aranson, I. New Journal of Physics 10 (2008) 043034 (12pp).
- Identifying repeating motifs in the activation of synchronized bursts in cultured neuronal networks.
Raichman, N. and Ben-Jacob, E. Journal of Neuroscience Methods 170 (2008)96-110.
- Emergence of agent Swarm Migration and vortex formation through inelatic Collisions
Grossman, D., Aranson, I. S. and Ben-Jacob, E. New Journal of Physics 10 (2008)
- Swarming and Complex pattern Formation Paenibacillus vortex studied by imaging and tracking celles
Ben-Jacob, E., Ingham, J. C. BMC Microbiology 8:36 (2008)
2007
- Detecting and localizing the foci in human epileptic seizures
Ben-Jacob, E., Boccaletti, S., Pomyalov, S., Procaccia, I. and Towle, L. V. CHAOS 17, 043113 (2007).
- Study of hypothermia on cultured neuronal networks using multi-electrode arrays
Rubinsky, L., Raichman, N., Baruchi, I., Shein, M.,
Lavee, J., Frenk, H., Ben-Jacob, E. Journal of Neuroscience Methods 160 (2007) 288-293
- Electro-chemical and biological properties of carbon nanotube based multi-electrode arrays.
Gabay, T., Ben-David, M., Kalifa, I., Sorkin, R., R. Abrams, Z., Ben-Jacob, E. And Hanein, Y. Nanotechnology, 18, 035201-035206 (2007).
- Mapping and assessment of epileptogenic foci using frequency-entropy templates
Ben-Jacob, E., Doron, I., Gazit, T., Rephaeli, E., Sagher, O. and Towle, L. V. PHYSICAL REVIEW E 76, 051903 2007.
- Correlated phenotypic transitions to competence in bacterial colonies
Hecht, I., Ben-Jacob, E. and Levine, H. Phys. Rev. E 76, 040901(R)(2007)
- The Astrocyte as aGatekeeper of Synaptic I-nformation Transfer
Volman, V., Ben-Jacob, E. and Levine, H. Neural Computation 19, (2007) 303-326/
- Calcium and Synaptic dynamics underlying rererberatory activity in Neuronal networks.
Volman, V., Gerkin, C. R., Lau, R. M.,
Ben-Jacob, E. and Guo-Qiang. Bi.Phys. Biol. 4 (2007) 91-103
- Towards Neuro-Memory-Chip: Imprinting multiple memories in cultured neural networks
Baruchi, I. and Ben-Jacob, E. PHYSICAL REVIEW E 75, 050901.R (2007)
- Compact self-wiring in cultured neural networks
Sorkin, R., Gabay, T., Blinder, P., Baranes, D., Ben-Jacob, E. and Hanein, Y. Journal of neural Engineering (2007)
- The Effect of rf-irradiation on electrochemical_deposition
Ben-Jacob, E., Aharonov, V.L., Miller, L., Katsir, Y. Journal of The Electrochemical Society, 154 4 D249-D259 2007
2006
- Adult, sex-specific behavior characterized by elevated neuronal functional complexity
Fuchsa, E., Hulata, E., Ben-Jacob, E. and Ayali, A. Lippincott Williams and Wilkins Vol 17, no 11(2006) 1153-1158
- The Astrocyteas Gatekeeper of Synaptic Information Transfer
Volman, V., Ben-Jacob, E. and Levine, H. Neural Computation(2006)
- Noise resistance in the spindle assembly checkpoint
Doncic, A., Ben-Jacob, E. and Barkai, N. Molecular Systems Biology (2006)
- Time-invariant person-specific frequency templates in human brain activity
Doron, I., Hulata, E., Baruchi, I., Towle, V.L. and Ben-Jacob, E. Phys.Rev.Lett.PRL 96, 258101 (2006)
- Harnessing Bacterial Intelligence:
A Prerequisite for Human Habitation of Space
Ben-Jacob, E. Beyond Earth, Chapter 13 (2006)
- Functional Holography Analysis: Simplifying the complexity of dynamical networks
Baruchi, I., grossman, D., Volman, V., Hunter, J., Towle, V. L., Ben-Jacob, E.
In Chaos Focus Issue on Stability and Pattern Formation in Networks of
Dynamical Systems edited by L. Pecora and S. Boccaletti Chaos 16,
015112 (2006)
- Collective plasticity and individual stability in cultured neural networks
Raichman, N., Volman, V. and Ben-Jacob, E. Neurocomputing 69, 1150-1154(2006)
2005
- Self-Regulated complexity in neural networks
Hulata, E., Volman, V., Ben-Jacob, E. J. Natural Computing v4. n4 363-386 (2005)
- Topological classification of biological computing networks
Blinder, P., Baruchi, I., Volman, V., Baranes, D., Levine, H. and Ben-Jacob, E. Natural Computing, v 4 n 4 339-361 (2005)
- Controlling an oscillating Jackson-type network having state-dependent service rates
Arazi, A., Ben-Jacob, E., Yechiali, U. Math. Meth. Oper. Res. DOI 10.1007/s00186-005-0041-5 (2005)
- Self-engineering capabilities of bacteria
Ben-Jacob, E. and Levine, H. Interface. Published online. rsif (2005)
- Seeking the Foundations of Cognition in Bacteria: From Schrdinger's Negative Entropy to Latent Information
Ben-Jacob, E., Shapira, Y. and Tauber, I. A. Physica A vol 359 ; 495-524, (2006)
- Bacteria harnessing complexity
Ben-Jacob, E., Aharonov, Y. and Shapira, Y. Biofilms (2005) 1, 239263
- Manifestation of function-follow-form in cultured neuronal networks
Volman, V., Baruchi, I. and Ben-Jacob, E. Physical Biology 2(2005) 98-110.
- A Two-phase growth strategy in cultured neuronal networks as reflected by the distribution of neurite branching angles
Shefi, O., Golobovitz, S., Ben-Jacob, E. and Ayali, A. J. Neurobiol. 62(3): 361-368. (2005) 98-110.
- Meaning-Based Natural Intelligence Vs. Information-Based Artificial Intelligence
Ben-Jacob, E. and Shapira, Y. Cradle of Creativity (2005).
- Carbon Nanotube Sites for Neural- Network Patterning and Recording
Gabay, T., Kalifa, I., Ezra, L., Ben-Jacob, E. and Hanein, Y. Tel Aviv Nano Technology Workshop Maagan April 2005.
- Evaluating putative mechanisms of the mitotic
spindle checkpoint
Doncic, A., Ben-Jacob, E., and Barkai, N. 6332-6337 PNAS
vol. 102 no. 18 May 3, 2005
- Functional Holography of Complex Networks Activity From Cultures to the Human Brain
Baruchi, I., Towle, V.L. and Ben-Jacob, E. Complexity, Volume 10, No 3, p. 38-51,(2005).
- Engineered self-organization of neural networks
using carbon nanotube clusters
Gabay, T., Jakobs,E., Ben-Jacob, E., Hanein, Y. Physica A 350 611-621 (2005).
2004
- Functional Holography of Recorded Neuronal Networks Activity
Baruchi, I. and Ben-Jacob, E. Neuroinformatics , Volume 2, Issue 3, p. 333-352,(Fall 2004).
- Self-regulated homoclinic chaos in neural networks activity
Volman, V., Baruchi, I. and Ben-Jacob, E. Experimental Chaos:
8th Experimental Chaos Conference, Eited by Boccaletti S. et al.,
American Institute of Physics, Melville NY,p.197-209, (2004)
- Modeling of Synchronized Bursting Events-The Importance of Inhomogeneity.
Persi, E., Horn, D., Volman, V., Segev, R., Ben-Jacob, E. Neural Computation vol 16(12) (December 2004)
- Contextual Regularity and Complexity of Neuronal Activity: from Stand-Alone Cultures to Task-Performing Animals.
Ayali,
A., Fuchs, E., Zilberstein, Y., Shefi, O., Hulata, E., Baruchi, I., Ben-Jacob, E. Complexity, Vol 9, Issue 6, 25-32, (July/August 2004) .
- Engineered Self Organization in natural and man-made Systems.
Raichman, N., Gabay, T., Katsir, Y., Shapira, Y., and Ben-Jacob, E. Continuum Models and Discrete Systems, Edited by Bergman D. et al Kluwer Academic Publishers, Netherlands,p.187-205 (2004)
- Des fleurs de Bacteries
Ben-Jacob, E., Levine, H. Les formes de la vie, Pour La Science, p.78-83 (2004)
- Bacterial Linguistic Communication and Social Intelligence.
Ben-Jacob, E., Becker, I., Shapira, Y. Trends in Microbiology, Vol 12/8 pp 366-372 (2004).
- Physical schemata underlying biological pattern formation-examples,issues and strategies.
Levine, H. and Ben-Jacob, E. J. Physical Biology 1, pp 14-22 (June 2004).
- Biophysical constraints on neuronal branching.
Shefi, O., Harel, A., Chklovskii, D.B., Ben-Jacob, E. and Ayali, A. Neurocomputing Vol 58-60C, pp 487-495 (2004).
- Self-Regulated Complexity in Cultured Neuronal Networks.
Hulata, E., Baruchi, I., Segev, R., Shapira, Y., and Ben-Jacob, E. Phys. Rev. Lett. 92(19):198105(1)-198105(4) (2004).
- Neural modeling of synchronized bursting events.
Persi, E., Horn, D., Segev, R., Ben-Jacob, E., Volman, V. Neurocomputing Vol 58 60C, pp 179-184 (2004).
- Hidden Neuronal Correlations in Cultured Networks.
Segev, R., Baruchi, I., Hulata, E., Ben-Jacob, E. Phys. Rev. Lett. 92(11): 118102(1)-118102(4) (2004).
- Generative Modeling of Regulated Activity in Cultured Neuronal Networks.
Volman, V., Baruchi, I., Persi, E., Ben-Jacob, E. Physica A 335: 249-278 (2004).
- Bridging Genetic Netowrks and Queing Theory.
Arazi, A., Ben-Jacob, E., Yechiali, U. Physics A 332 :585-616 (2004).
2003
- Communication- Basd Regulated Freedom of Response in Bacterial Colonies.
Ben-Jacob, E., Shapira, Y., Becker, I. Physica A Vol 330/1-2 pp 218-231 (2003).
- Formation of Electrically Active Clusterized Neural Networks.
Segev, R., Benveniste, M., Shapira, Y., Ben-Jacob, E. Phys. Rev. Lett. 90: 168101/1-4 (2003).
- Bursts of sectors in expanding bacterial colonies as a possible model for tumor growth and metastases.
Ron, I. G., Golding, I., Lifsitz-Mercer, B., Ben-Jacob, E. Physica A, 320, 485-96 (2003).
- Bacterial Self-Organization: Co-Enhancement of Complexification and Adaptability in a Dynamic Environment.
Ben-Jacob, E. Phil. Trans. R. Soc. Lond. A, 361:1283-1312, (2003).
- Evolvable Hardware: Genetic Search in a Physical Realm.
Raichman, N., Segev, R., Ben-Jacob, E., Physica A 326: (1-2)265-285 (2003).
2002
- A Method for Spike Sorting and Detection Based on Wavelet Packets and Shannon's Mutual Information.
Hulata, E., Segev, R., Ben-Jacob, E., J.Neuroscience Methods 117 1-12 (2002).
- Sub-micromorphology of the epicuticle of hornets: AFM studies
Ishay, S. J., Litinetsky, L., Pertsis, V., Barkay, Z. and Ben-Jacob, E. J. Electron Micr. 51(1): 79-86(2002).
- Long Term Behavior of Lithographically Prepared in vitro Neuronal Networks.
Segev, R., Benveniste, M., Hulata, E., Cohen, N., Palevski, A.,
Kapon, E., Shapira, Y., Ben-Jacob, E. Phys. Rev. Lett. 88, 118102
(2002).
- When Order Comes Naturally.
Ben-Jacob, E. Nature 415, 370 (2002).
- Morphological characterization of in vitro neuronal networks.
Shefi, O., Golding, I., Segev, R., Ben-Jacob, E. and Ayali, A.
Physical Review E 66: 021905 (2002)
- Growth morpology of two-dimensional insect neural networks.
Ayali, A., Shefi, O. and Ben-Jacob, E. Neurocomputing 44-46 Pp 635-643 (2002).
- Self-organization of two-dimensional insect neural networks.
Ayali,
A., Shefi, O. and Ben-Jacob, E. In: Experimental Chaos 2001. (Eds.
Boccaletti, S. Gluckmam, B. J. Kurths, J. Pecora, L. M. and Spano, M.
L.). pp 465-475. American Institute of Physics, Melville, New
York.(2002)
2001
- A Quantitative Study of the Dynamics of Adaptive Mutations Appearance.
Golding, I., Drossel, B., Shapira, Y., Ben-Jacob, E. PhysicaA 294, 195-212 (2001).
- The Artistry of Nature.
Ben-Jacob, E., Levine, H. Nature 409, 985-986 (2001).
- Observations and Modeling of Synchronized Bursting in 2D Neural Networks.
Segev, R., Shapira, Y., Benveniste, M., Ben-Jacob, E., Phys. Rev. E 64, 011920 (2001).
- Spontaneous synchronized bursting in 2D neural networks.
Segev, R., Ben-Jacob, E. Physica A, 302, no.1-4, pp.64-69 (2001).
- Atomic force pulling: probing the local elasticity of the cell membrane.
Scheffer, L., Bitler, A., Ben-Jacob, E., Korenstein, R. European Biophysics Journal, vol.30, no.2, pp.83-90 (2001).
- Biofluiddynamics of lubricating bacteria.
Cohen, I., Golding, I., Ron, I. G., Ben-Jacob, E. Mathematical Methods in the Applied Sciences 24, no.17-18, pp.1429-68 (2001).
- Chemical waves and internal energy during cooperative self-wiring of neural nets.
Segev, R., Ben Jacob, E. Neurocomputing 38-40 pp. 875-879 (2001)
2000
- Bacterial Cooperative Organization Under Antibiotic Stress.
Ben-Jacob, E., Cohen, I., Golding, I., Gutnick, D., Tcherpakov, M., Helbing, D., Ron, I. PhysicaA 282 247-282 (2000).
- Detection and Sorting of Neural Spikes Using Wavelet Packets.
Hulata, E., Segev, R., Shapira, Y., Benveniste, M., Ben-Jacob, E. Phys. Rev. Lett. 85, 4637-4640 (2000).
- The Cooperative Self-Organization of Microorganisms.
Ben-Jacob, E., Cohen, I., Levine, H. Adv. Phys. 49, 395-554 (2000).
- Modeling Branching and Chiral Colonial Patterning of Lubricating Bacteria.
Ben-Jacob, E., Cohen, I., Golding, I., Kozlovsky, Y. Mathematical Models
for Biological Pattern Formation, IMA volumes, IMA Vol. Math. Appl.,
121, P. K Maini and H. G. Othmer, eds. Springer-Verlag, New-York, pp.
211-254. (2001).
- From branching to nebula patterning during colonial development of the Paenibacillus alvei bacteria.
Cohen, I., Ron, I. G., Ben-Jacob. E. Physica A, vol.286, pp.321-36 (2000).
- Conformation changes and folding of proteins mediated by Davydov's soliton.
Caspi, S., Ben-Jacob, E. Physics Letters A, vol.272, no.1-2, pp.124-9 (2000)
- Generic modeling of chemotactic based self-wiring of neural networks.
Segev,R., Ben-Jacob, E. Neural Networks, vol.13, no.2, pp.185-99 (2000).
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